Plant Cell 9(5):689–701Įtchells JP, Mishra LS, Kumar M, Campbell L, Turner SR (2015) Wood formation in trees is increased by manipulating PXY-regulated cell division. Turner SR, Somerville CR (1997) Collapsed xylem phenotype of Arabidopsis identifies mutants deficient in cellulose deposition in the secondary cell wall. Mussadiq Z, Laszlo B, Helyes L, Gyuricza C (2015) Evaluation and comparison of open source program solutions for automatic seed counting on digital images.
Jiang Y, Qi X, Chrenek MA, Gardner C, Boatright JH, Grossniklaus HE, Nickerson JM (2013) Functional principal component analysis reveals discriminating categories of retinal pigment epithelial morphology in mice. Wählby C, Kamentsky L, Liu ZH, Riklin-Raviv T, Conery AL, O’Rourke EJ, Sokolnicki KL, Visvikis O, Ljosa V, Irazoqui JE, Golland P, Ruvkun G, Ausubel FM, Carpenter AE (2012) An image analysis toolbox for high-throughput C. National Institutes of Health, Bethesda, MD, USA. The pipeline will also save a spreadsheet containing the used settings (filename prefi圎xperiment). CellProfiler will analyze the image sets and will export the results to a spreadsheet on the selected drive and folder. Go to NameAndTypes and adjust the settings.
Set the conversion method to combine, the output image name to ‘Grayscale’ and select the original color images as the input (the images added in step 1 ). Click Start Test Mode to check for errors in the pipeline. Could I ask whether you started CellProfiler by double-clicking on a pipeline or project file We think this happens sometimes when loading such files off a different drive than CellProfiler is installed on.
CELLPROFILER NAMEANDTYPES ERROR SOFTWARE
Carpenter AE, Jones TR, Lamprecht MR, Clarke C, Kang IH, Friman O, Guertin DA, Chang JH, Lindquist RA, Moffat J, Golland P, Sabatini DM (2006) Cell Profiler: image analysis software for identifying and quantifying cell phenotypes. Click the ‘Add Module’ button at the bottom left of the program window and insert a ‘ ColorToGray ’ module, found within the ‘Image Processing’ tab.
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